STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA0799Putative outer membrane protein; Similar to Bradyrhizobium japonicum Bll3563 protein bll3563 SWALL:BAC48828 (EMBL:AP005948) (3441 aa) fasta scores: E(): 8.9e-20, 22.46% id in 3387 aa, and to Brucella suis outer membrane autotransporter bra1148 SWALL:AAN34307 (EMBL:AE014607) (3420 aa) fasta scores: E(): 6.1e-08, 22.91% id in 3217 aa. (3228 aa)    
Predicted Functional Partners:
ECA0798
Putative membrane protein; Similar to Vibrio vulnificus conserved hypothetical protein vv12340 SWALL:AAO10715 (EMBL:AE016804) (465 aa) fasta scores: E(): 0.14, 24.52% id in 424 aa, and to Salmonella typhimurium peptidase b pepb or stm2536 SWALL:PEPB_SALTY (SWALL:Q9RF52) (427 aa) fasta scores: E(): 1.8, 23.39% id in 265 aa.
 
     0.903
ECA0800
Similar to Chromobacterium violaceum hypothetical protein cv0465 SWALL:Q7P0V0 (EMBL:AE016911) (527 aa) fasta scores: E(): 9.9e-65, 40.31% id in 506 aa.
 
     0.821
ECA0803
Putative membrane protein; No significant database matches.
 
     0.801
ECA0801
Putative exported protein; Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 2.3e-10, 26.29% id in 232 aa, and to Shewanella oneidensis HlyD family secretion protein so3483 SWALL:AAN56476 (EMBL:AE015784) (369 aa) fasta scores: E(): 2.4e-09, 25.49% id in 251 aa. Note that there are no significant database matches to enterobacterial species; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.795
ECA0802
Putative membrane protein; Similar to Vibrio cholerae hypothetical protein vc0913 SWALL:Q9KTI9 (EMBL:AE004175) (352 aa) fasta scores: E(): 1.9e-05, 24.12% id in 228 aa, and to Vibrio cholerae periplasmic linker protein, putative vc1756 SWALL:Q9KR86 (EMBL:AE004253) (364 aa) fasta scores: E(): 4e-05, 27.53% id in 247 aa.
 
     0.785
ECA0795
Putative membrane protein; Similar to Bradyrhizobium japonicum Blr1433 protein blr1433 SWALL:BAC46698 (EMBL:AP005940) (271 aa) fasta scores: E(): 0.00039, 29.04% id in 272 aa, and to Rhizobium loti O-linked glcnac transferase mlr3120 SWALL:Q98GY3 (EMBL:AP003001) (280 aa) fasta scores: E(): 0.00027, 25.61% id in 246 aa.
 
     0.749
ECA0787
Putative membrane protein; Similar to Rhizobium loti type IV prepilin peptidase, CpaA mlr5594 SWALL:Q98BF9 (EMBL:AP003007) (175 aa) fasta scores: E(): 3.7e-05, 30.53% id in 167 aa, and to Rhizobium meliloti probable CpaA2 pilus assembly protein SWALL:Q92YL6 (EMBL:AE007272) (170 aa) fasta scores: E(): 6.4e-05, 28.48% id in 172 aa.
 
     0.740
ECA0791
Conserved hypothetical protein; Similar to Bradyrhizobium japonicum protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1.7e-20, 26.68% id in 371 aa, and to Caulobacter crescentus pilus assembly protein CpaE SWALL:Q9A495 (EMBL:AE005958) (517 aa) fasta scores: E(): 7.2e-16, 27.76% id in 371 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpF SWALL:Q8UIS3 (EMBL:AE008995) (462 aa) fasta scores: E(): 5.2e-13, 29.79% id in 292 aa; Similar to Bradyrhizobium japonicum Blr3493 protein blr3493 SWALL:BAC48758 (EMBL:AP005947) (481 aa) fasta scores: E(): 1. [...]
 
     0.650
ECA0788
Putative exported protein; Similar to Bradyrhizobium japonicum CtpC protein SWALL:BAC45932 (EMBL:AP005937) (270 aa) fasta scores: E(): 2.7e-09, 30.96% id in 281 aa, and to Vibrio vulnificus flp pilus assembly protein CpaB vv12330 SWALL:AAO10705 (EMBL:AE016804) (279 aa) fasta scores: E(): 8.4e-09, 28.94% id in 304 aa.
 
     0.584
ECA0794
Putative type IV pilus protein; Similar to Vibrio vulnificus flp pilus assembly protein TadC vv12336 SWALL:AAO10711 (EMBL:AE016804) (293 aa) fasta scores: E(): 2.7e-25, 31.34% id in 319 aa, and to Agrobacterium tumefaciens components of type IV pilus CtpI or atu0216 or agr_c_371 SWALL:Q8UIS6 (EMBL:AE008995) (328 aa) fasta scores: E(): 2.7e-24, 34.12% id in 296 aa.
 
     0.520
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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