STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1285Conserved hypothetical protein; Similar to the C-terminal regions of several hypothetical proteins including Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.9e-06, 37% id in 100 aa, and to Mycobacterium tuberculosis hypothetical protein rv0976c or mtv044.04c or mt1003.1 SWALL:O86320 (EMBL:Z79700) (560 aa) fasta scores: E(): 0.00068, 35.29% id in 85 aa. (99 aa)    
Predicted Functional Partners:
ECA1286
Similar to Pseudomonas aeruginosa hypothetical protein Pa2886 SWALL:Q9HZW1 (EMBL:AE004714) (600 aa) fasta scores: E(): 1.4e-40, 34.88% id in 450 aa, and to Streptomyces coelicolor hypothetical protein sco4379 or scd10.11 SWALL:Q9K3W5 (EMBL:AL939119) (558 aa) fasta scores: E(): 2.3e-21, 34.24% id in 365 aa.
 
     0.953
citM
Similar to Bacillus subtilis Mg(2+)/citrate complex secondary transporter CitM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 7.6e-53, 40.76% id in 444 aa, and to Xylella fastidiosa Mg++/citrate complex transporter xf0320 SWALL:Q9PGI0 (EMBL:AE003885) (457 aa) fasta scores: E(): 1.1e-68, 41.83% id in 447 aa.
 
     0.894
citM-2
Citrate transporter; Similar to Bacillus subtilis mg citM SWALL:CITM_BACSU (SWALL:P55069) (433 aa) fasta scores: E(): 1.4e-80, 53.24% id in 432 aa, and to Bacillus subtilis citrate transporter CitN or CitH or n15cR SWALL:CITN_BACSU (SWALL:P42308) (426 aa) fasta scores: E(): 3.2e-91, 57.14% id in 434 aa.
 
     0.635
atoA
Similar to Escherichia coli acetate CoA-transferase beta subunit AtoA or b2222 SWALL:ATOA_ECOLI (SWALL:P76459) (216 aa) fasta scores: E(): 1.4e-54, 70.33% id in 209 aa, and to Clostridium acetobutylicum butyrate-acetoacetate CoA-transferase subunit B CtfB or cap0164 SWALL:CTFB_CLOAB (SWALL:P23673) (221 aa) fasta scores: E(): 2.6e-44, 57.2% id in 215 aa.
       0.525
atoD
Similar to Escherichia coli acetate CoA-transferase alpha subunit AtoD or b2221 SWALL:ATOD_ECOLI (SWALL:P76458) (220 aa) fasta scores: E(): 3.9e-48, 61.46% id in 218 aa.
       0.525
atoB
Similar to Clostridium acetobutylicum acetyl-CoA acetyltransferase ThlA or Thl or cac2873 SWALL:THLA_CLOAB (SWALL:P45359) (392 aa) fasta scores: E(): 9.5e-81, 59.48% id in 390 aa, and to Escherichia coli acetyl-CoA acetyltransferase AtoB or b2224 SWALL:ATOB_ECOLI (SWALL:P76461) (394 aa) fasta scores: E(): 1.2e-87, 64.01% id in 389 aa; Belongs to the thiolase-like superfamily. Thiolase family.
       0.472
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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