STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1477Similar to Ralstonia solanacearum hypothetical protein rsc2590 or rs00838 SWALL:Q8XW85 (EMBL:AL646070) (128 aa) fasta scores: E(): 2.3e-14, 57.33% id in 75 aa, and to Mycobacterium tuberculosis hypothetical protein rv2740 or mtv002.05 SWALL:O33283 (EMBL:AL008967) (149 aa) fasta scores: E(): 0.3, 36.23% id in 69 aa. (88 aa)    
Predicted Functional Partners:
ECA1478
AraC-family transcriptional regulator; Similar to Ralstonia solanacearum probable transcription regulator protein rsc2598 or rs00846 SWALL:Q8XW77 (EMBL:AL646070) (299 aa) fasta scores: E(): 7.9e-85, 74.4% id in 293 aa, and to Rhizobium loti probable transcriptional regulator mlr2197 SWALL:Q98IX9 (EMBL:AP002999) (298 aa) fasta scores: E(): 3.3e-49, 48.92% id in 280 aa.
       0.526
ECA1476
Similar to Ralstonia solanacearum hypothetical protein rsc3100 or rs00553 SWALL:Q8XUT5 (EMBL:AL646073) (131 aa) fasta scores: E(): 0.0028, 31.3% id in 115 aa, and to Halobacterium sp. Vng0367H SWALL:Q9HS78 (EMBL:AE004995) (114 aa) fasta scores: E(): 0.049, 28.71% id in 101 aa.
       0.403
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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