STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA1554Hypothetical protein; Doubtful CDS. No significant database matches. (58 aa)    
Predicted Functional Partners:
ECA1555
Similar to Pseudomonas aeruginosa hypothetical protein Pa2336 SWALL:Q9I1E2 (EMBL:AE004659) (446 aa) fasta scores: E(): 5.1e-44, 39.82% id in 467 aa, and to Salmonella typhimurium putative pqq enzyme repeat stm3632 SWALL:Q8ZLA7 (EMBL:AE008868) (374 aa) fasta scores: E(): 9e-07, 30.04% id in 406 aa.
       0.671
astC
Putative sulfate ester transporter, ATP-binding component; Similar to Pseudomonas putida AtsC SWALL:Q9WWU7 (EMBL:AF126201) (287 aa) fasta scores: E(): 2.6e-52, 63.59% id in 239 aa, and to Bacillus subtilis putative aliphatic sulfonates transport ATP-binding protein SsuB SWALL:SSUB_BACSU (SWALL:P97027) (274 aa) fasta scores: E(): 1.4e-34, 43.72% id in 247 aa, and to.
       0.640
atsB
Putative sulfate ester transporter, permease component; Similar to Pseudomonas putida AtsB SWALL:Q9R9W6 (EMBL:AF126201) (535 aa) fasta scores: E(): 1.1e-103, 55.88% id in 510 aa, and to Bacillus subtilis putative aliphatic sulfonates transport permease protein SsuC SWALL:SSUC_BACSU (SWALL:P40401) (276 aa) fasta scores: E(): 1.6e-23, 36.14% id in 249 aa.
       0.640
ECA1553
Putative transposase (partial); Partial CDS. Similar to the C-terminal region of Photorhabdus luminescens transposase Tnp SWALL:AAN64216 (EMBL:AY144118) (328 aa) fasta scores: E(): 0.00016, 32.39% id in 142 aa, and to Salmonella typhimurium putative transposase stm0479 SWALL:Q8ZRA4 (EMBL:AE008718) (311 aa) fasta scores: E(): 1.9e-09, 32.03% id in 128 aa.
       0.459
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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