STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrcJType III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa. (255 aa)    
Predicted Functional Partners:
hrcT
Type III secretion protein; Similar to Erwinia amylovora HrcT SWALL:Q46648 (EMBL:L25828) (265 aa) fasta scores: E(): 2.4e-69, 66.92% id in 257 aa, and to Pantoea agglomerans HrcT protein HrcT SWALL:Q47858 (EMBL:X99768) (265 aa) fasta scores: E(): 4.5e-67, 62.3% id in 260 aa.
 
 
 0.993
hrcS
Type III secretion protein; Similar to Erwinia amylovora HrcS SWALL:Q46647 (EMBL:L25828) (86 aa) fasta scores: E(): 2.8e-22, 76.19% id in 84 aa, and to Pantoea agglomerans HrcS protein HrcS SWALL:Q47857 (EMBL:X99768) (83 aa) fasta scores: E(): 2.6e-21, 75.61% id in 82 aa.
 
 
 0.993
hrpI
Type III secretion protein; Similar to Erwinia amylovora harpin secretion protein HrpI SWALL:HRPI_ERWAM (SWALL:P35654) (697 aa) fasta scores: E(): 2e-193, 76.35% id in 702 aa, and to Pantoea agglomerans HrcV protein HrcV SWALL:Q937I5 (EMBL:X99768) (719 aa) fasta scores: E(): 2.2e-196, 75.42% id in 704 aa.
 
 
 0.988
hrcR
Type III secretion protein; Similar to Erwinia herbicola harpin secretion protein HrcR SWALL:HRCR_ERWHE (SWALL:Q47856) (217 aa) fasta scores: E(): 6.3e-63, 74.19% id in 217 aa, and to Erwinia amylovora harpin secretion protein HrcR SWALL:HRCR_ERWAM (SWALL:Q46646) (217 aa) fasta scores: E(): 1.8e-62, 75.57% id in 217 aa.
 
 
 0.987
hrcC
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa.
 
 
 0.987
hrpJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. atrosepticum secretion protein HrpJ type III HrpJ SWALL:Q8KM25 (EMBL:AJ496800) (402 aa) fasta scores: E(): 1.2e-121, 90.79% id in 402 aa, and to Erwinia chrysanthemi HrpJ WALL:AAO34609 (EMBL:AY169276) (393 aa) fasta scores: E(): 2.3e-80, 64.59% id in 387 aa.
 
  
 0.961
hrcU
Type III secretion protein; Similar to Erwinia amylovora HrcU SWALL:Q46649 (EMBL:L25828) (360 aa) fasta scores: E(): 1e-95, 66.94% id in 360 aa, and to Pantoea agglomerans HrcU protein HrcU SWALL:Q47859 (EMBL:X99768) (360 aa) fasta scores: E(): 5.4e-92, 64.34% id in 359 aa.
 
  
 0.905
outD
Similar to Erwinia carotovora general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 3e-215, 92.76% id in 650 aa, and to Klebsiella pneumoniae general secretion pathway protein D precursor PulD SWALL:GSPD_KLEPN (SWALL:P15644) (660 aa) fasta scores: E(): 1.9e-173, 74.31% id in 654 aa.
 
 
 0.899
hrpE
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpE SWALL:Q93FZ4 (EMBL:AF302656) (199 aa) fasta scores: E(): 3.5e-65, 87.37% id in 198 aa, and to Erwinia chrysanthemi HrpE SWALL:Q8KUL7 (EMBL:AF448202) (200 aa) fasta scores: E(): 7.5e-28, 42.85% id in 196 aa.
  
  
 0.898
hrpA
Type III secretion protein; Major structure protein of the hrp pilus, which is a component of the type III secretion system (TTSS, Hrp secretion system) required for effector protein delivery, parasitism, and pathogenicity. The hrp pilus functions as a conduit for protein delivery into the host cell (By similarity); Belongs to the HrpA type 2 family.
     
 0.876
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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