STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgFSimilar to Erwinia chrysanthemi pectin degradation protein KdgF SWALL:KDGF_ERWCH (SWALL:Q05527) (110 aa) fasta scores: E(): 3.3e-38, 89.09% id in 110 aa, and to Yersinia pestis putative pectin degradation protein KdgF or y1888 SWALL:AAM85455 (EMBL:AE013792) (116 aa) fasta scores: E(): 2.9e-33, 77.98% id in 109 aa. (111 aa)    
Predicted Functional Partners:
kduI1
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.718
kduI2
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.592
kduD
2-keto-3-deoxygluconate oxidoreductase; Similar to Pectobacterium carotovorum subsp. atrosepticum 2-keto-3-deoxygluconate oxidoreductase KduD SWALL:Q8KHI5 (EMBL:AJ506783) (253 aa) fasta scores: E(): 6.3e-94, 98.41% id in 253 aa, and to Erwinia chrysanthemi 2-deoxy-D-gluconate 3-dehydrogenase KduD SWALL:KDUD_ERWCH (SWALL:Q05528) (253 aa) fasta scores: E(): 4.4e-87, 89.72% id in 253 aa.
 
   
 0.575
kdgM
Similar to Erwinia chrysanthemi oligogalacturonate-specific porin KdgM precursor kdgM SWALL:KDGM_ERWCH (SWALL:Q934G3) (236 aa) fasta scores: E(): 7.1e-64, 67.22% id in 238 aa. Also similar to ECA2302 (59.259% id).
     
 0.531
kdgR
Pectin degradation repressor; Similar to Pectobacterium carotovorum subsp. atrosepticum KdgR repressor kdgR SWALL:Q8KM23 (EMBL:AJ504847) (263 aa) fasta scores: E(): 5.4e-99, 97.33% id in 263 aa, and to Erwinia chrysanthemi pectin degradation repressor protein KdgR SWALL:KDGR_ERWCH (SWALL:P37728) (305 aa) fasta scores: E(): 2.8e-92, 91.25% id in 263 aa.
 
   
 0.517
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
      
 0.504
ogl
Oligogalacturonate lyase; Involved in degradation of pectin, which causes soft-rod disease in plants.
 
   
 0.488
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate; Belongs to the mannonate dehydratase family.
 
     0.483
hexR
Similar to Escherichia coli hex regulon repressor HexR or b1853 SWALL:HEXR_ECOLI (SWALL:P46118) (289 aa) fasta scores: E(): 3.1e-87, 82.51% id in 286 aa, and to Yersinia pestis hex regulon repressor HexR or ypo2065 SWALL:Q8ZET8 (EMBL:AJ414151) (289 aa) fasta scores: E(): 1.1e-91, 87.41% id in 286 aa.
      
 0.475
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
      
 0.471
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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