STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2979Probable hydrolase; Similar to Pseudomonas sp. WBC-3 methyl parathion hydrolase mpD SWALL:Q841S6 (EMBL:AY251554) (331 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa, and to Plesiomonas sp. DLL-1 methyl parathion degrading protein SWALL:Q93SP1 (EMBL:AY029773) (341 aa) fasta scores: E(): 2.6e-22, 31.57% id in 285 aa. (279 aa)    
Predicted Functional Partners:
ECA2977
Similar to Pseudomonas fluorescens hypothetical protein SWALL:AAN32872 (EMBL:AF461725) (79 aa) fasta scores: E(): 1.6e-14, 59.42% id in 69 aa, and to Bradyrhizobium japonicum Blr3308 protein blr3308 SWALL:BAC48573 (EMBL:AP005947) (105 aa) fasta scores: E(): 0.04, 31.34% id in 67 aa.
 
     0.911
ECA2978
Hypothetical protein; No significant database matches.
       0.755
ECA2976
Similar to Pseudomonas fluorescens putative transcriptional regulator SWALL:AAN32873 (EMBL:AF461725) (238 aa) fasta scores: E(): 7.6e-57, 61.34% id in 238 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa0448 SWALL:Q9I670 (EMBL:AE004482) (302 aa) fasta scores: E(): 2.4e-41, 39.86% id in 301 aa. Also similar to ECA1602 (96.026% id. in 302 aa overlap); Belongs to the LysR transcriptional regulatory family.
 
    0.659
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 
 0.576
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
   
 
 0.539
ECA2545
Similar to Yersinia pestis putative exported protein ypo1408 or y2762 SWALL:Q8ZG97 (EMBL:AJ414148) (182 aa) fasta scores: E(): 4.6e-60, 82.41% id in 182 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein ycbk or b0926 or c1068 or z1273 or ecs1009 or sf0923 SWALL:YCBK_ECOLI (SWALL:P75848) (182 aa) fasta scores: E(): 5.1e-56, 78.57% id in 182 aa.
 
    0.459
ECA2975
Conserved hypothetical protein; Similar to unidentified bacterium hypothetical 22.4 kDa protein SWALL:Q93DV2 (EMBL:AF378538) (199 aa) fasta scores: E(): 1.2e-17, 35.67% id in 199 aa, and to Deinococcus radiodurans hypothetical protein Dr0445 SWALL:Q9RX70 (EMBL:AE001904) (191 aa) fasta scores: E(): 2.9e-17, 37.85% id in 177 aa.
 
     0.447
ECA3556
LysR-family transcriptional regulator; Similar to Pseudomonas aeruginosa MexT protein MexT SWALL:O87785 (EMBL:AJ007825) (304 aa) fasta scores: E(): 3.2e-33, 36.3% id in 303 aa, and to Burkholderia cepacia DntR SWALL:Q8VUD7 (EMBL:AF169302) (301 aa) fasta scores: E(): 5.8e-33, 35.88% id in 301 aa; Belongs to the LysR transcriptional regulatory family.
  
    0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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