STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cydB2Cytochrome D ubiquinol oxidase subunit II; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 1.3e-106, 69.12% id in 379 aa. (379 aa)    
Predicted Functional Partners:
cydA1
Cytochrome D ubiquinol oxidase subunit I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 2.3e-178, 83.9% id in 522 aa.
 0.999
cydA2
Cytochrome d ubiquinol oxidase subunit I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri cytochrome D ubiquinol oxidase subunit I CydA or Cyd-1 or b0733 or c0811 or sf0564 SWALL:CYDA_ECOLI (SWALL:P11026) (522 aa) fasta scores: E(): 1.2e-172, 80.15% id in 524 aa.
 0.999
ECA1367
Putative membrane protein; Similar to Erwinia chrysanthemi YbgT protein SWALL:Q937K9 (EMBL:AJ297885) (38 aa) fasta scores: E(): 3.5e-11, 76.31% id in 38 aa, and to Escherichia coli protein YbgT or b0734.1 SWALL:YBGT_ECOLI (SWALL:P56100) (37 aa) fasta scores: E(): 2.5e-10, 75% id in 36 aa.
  
 0.983
cydB1
Cytochrome D ubiquinol oxidase subunit II; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 cytochrome D ubiquinol oxidase subunit II CydB or Cyd-2 or b0734 or c0812 or z0901 or ecs0769 SWALL:CYDB_ECOLI (SWALL:P11027) (379 aa) fasta scores: E(): 4.4e-123, 80.21% id in 379 aa.
  
  
 
0.973
cydD
Similar to Escherichia coli transport ATP-binding protein CydD or HtrD or b0887 SWALL:CYDD_ECOLI (SWALL:P29018) (588 aa) fasta scores: E(): 6.8e-147, 68.02% id in 588 aa.
 
  
 0.917
cydC
Similar to Escherichia coli transport ATP-binding protein CydC or MdrA or MdrH or SurB or b0886 SWALL:CYDC_ECOLI (SWALL:P23886) (573 aa) fasta scores: E(): 7.8e-141, 65.67% id in 571 aa.
 
  
 0.837
cyoD
Cytochrome O ubiquinol oxidase subunit IV; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri cytochrome o ubiquinol oxidase protein CyoD or b0429 or z0532 or ecs0483 or sf0370 SWALL:CYOD_ECOLI (SWALL:P18403) (109 aa) fasta scores: E(): 5.7e-26, 67.27% id in 110 aa.
     
 0.605
nuoM
Similar to Escherichia coli, and Escherichia coli O157:H7 NADH-quinone oxidoreductase chain M NuoM or b2277 or z3536 or ecs3161 SWALL:NUOM_ECOLI (SWALL:P31978) (509 aa) fasta scores: E(): 8.2e-174, 86.18% id in 514 aa.
     
 0.603
ECA1368
Putative membrane protein; Similar to Erwinia chrysanthemi YbgE protein SWALL:Q937K8 (EMBL:AJ297885) (97 aa) fasta scores: E(): 1.7e-31, 79.16% id in 96 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein YbgE or b0735 or c0814 or z0903 or ecs0770 or sf0562 SWALL:YBGE_ECOLI (SWALL:P37343) (97 aa) fasta scores: E(): 4.2e-26, 63.54% id in 96 aa.
  
    0.597
ECA0947
Putative membrane protein; Similar to Pasteurella multocida hypothetical protein pm0404 SWALL:Q9CNM3 (EMBL:AE006076) (287 aa) fasta scores: E(): 4.7e-57, 54.31% id in 278 aa, and to Neisseria meningitidis putative integral membrane protein nma1777 SWALL:Q9JTH3 (EMBL:AL162757) (287 aa) fasta scores: E(): 3.8e-55, 52.43% id in 267 aa.
  
  
 0.590
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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