STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kgtPAlpha-ketoglutarate permease; Similar to Escherichia coli, and Shigella flexneri alpha-ketoglutarate permease KgtP or WitA or b2587 or sf2649 SWALL:KGTP_ECOLI (SWALL:P17448) (432 aa) fasta scores: E(): 9.2e-143, 82.31% id in 424 aa. (426 aa)    
Predicted Functional Partners:
rpmE2
Putative 50S ribosomal protein L31 (second copy); Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 50s ribosomal protein l31 type b-1 RpmE2 or YkgM or b0296 or c0407 or z0364 or ecs0327 SWALL:R31B_ECOLI (SWALL:P71302) (87 aa) fasta scores: E(): 2.5e-20, 67.5% id in 80 aa.
   
    0.539
nasB
Similar to Klebsiella pneumoniae nitrite reductase [NAD(P)H] large subunit NasB SWALL:NIRB_KLEPN (SWALL:Q06458) (957 aa) fasta scores: E(): 0, 70.89% id in 962 aa; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
   
  
 0.520
rpmJ2
Similar to Salmonella typhimurium, and Salmonella typhi 50S ribosomal protein L36 2 rpmj2 or stm0470 or sty0513 SWALL:R362_SALTY (SWALL:Q8XF38) (46 aa) fasta scores: E(): 6.8e-14, 71.73% id in 46 aa; Belongs to the bacterial ribosomal protein bL36 family.
   
    0.493
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
    0.448
ECA2354
Putative membrane protein; Similar to Salmonella typhimurium putative inner membrane protein stm2342 SWALL:Q8ZND3 (EMBL:AE008805) (463 aa) fasta scores: E(): 2.2e-69, 44.27% id in 445 aa, and to Staphylococcus aureus Mw0306 protein mw0306 SWALL:Q8NYB3 (EMBL:AP004823) (448 aa) fasta scores: E(): 1.1e-68, 45.57% id in 441 aa.
   
    0.438
ECA3775
Similar to Yersinia pestis putative membrane protein ypo2782 or y1615 SWALL:Q8ZD11 (EMBL:AJ414153) (418 aa) fasta scores: E(): 1.1e-135, 85.91% id in 419 aa, and to Escherichia coli O6 putative integral membrane protein c0334 SWALL:AAN78822 (EMBL:AE016756) (418 aa) fasta scores: E(): 4.6e-135, 85.91% id in 419 aa.
   
    0.438
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.432
ECA1923
Riboflavin synthase alpha chain; Similar to Escherichia coli, and Shigella flexneri riboflavin synthase alpha chain RibE or RibC or b1662 or sf1690 SWALL:RISA_ECOLI (SWALL:P29015) (213 aa) fasta scores: E(): 7e-61, 76.84% id in 203 aa.
   
    0.432
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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