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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA3616Conserved hypothetical protein; Similar to Ralstonia solanacearum probable RtcB-like protein rsp0700 or rs01749 SWALL:Q8XRY1 (EMBL:AL646080) (379 aa) fasta scores: E(): 4.6e-96, 64.09% id in 376 aa, and to Pseudomonas aeruginosa hypothetical protein Pa5471 SWALL:Q9HT99 (EMBL:AE004959) (379 aa) fasta scores: E(): 8.5e-95, 63.75% id in 378 aa. (373 aa)    
Predicted Functional Partners:
prfH
Similar to Escherichia coli peptide chain release factor homolog PrfH or b0236 SWALL:RFH_ECOLI (SWALL:P28369) (141 aa) fasta scores: E(): 2.8e-36, 66.66% id in 132 aa.
 
  
 0.919
kptA
RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
   
 0.744
pntA
Pyridine nucleotide transhydrogenase subunit-alpha; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the AlaDH/PNT family.
 
      0.651
pntB
Pyridine nucleotide transhydrogenase subunit-beta; The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane; Belongs to the PNT beta subunit family.
 
      0.649
ECA2171
Conserved hypothetical protein; Similar to Clostridium acetobutylicum homolog of eukaryotic DNA ligase iii cac0752 SWALL:Q97L14 (EMBL:AE007591) (265 aa) fasta scores: E(): 1.4e-47, 46.71% id in 259 aa.
  
   
 0.590
ECA2170
Similar to Escherichia coli O6 hypothetical protein c3243 SWALL:AAN81695 (EMBL:AE016765) (370 aa) fasta scores: E(): 3.8e-47, 38.31% id in 355 aa, and to Clostridium acetobutylicum polya polymerase related protein cac0753 SWALL:Q97L13 (EMBL:AE007591) (363 aa) fasta scores: E(): 4e-41, 35.24% id in 349 aa.
 
     0.515
ECA3615
Similar to Ralstonia solanacearum putative methyl-accepting chemotaxis transmembrane protein rsc3136 or rs00467 SWALL:Q8XUQ0 (EMBL:AL646073) (661 aa) fasta scores: E(): 2.9e-68, 39.38% id in 645 aa, and to Escherichia coli methyl-accepting chemotaxis protein II Tar or CheM or b1886 SWALL:MCP2_ECOLI (SWALL:P07017) (553 aa) fasta scores: E(): 1.9e-38, 44.34% id in 318 aa.
       0.428
rhs
Putative RHS protein; Similar to Photorhabdus luminescens Rhs Rhs-corE SWALL:AAN64198 (EMBL:AY144117) (1469 aa) fasta scores: E(): 3.1e-128, 41.64% id in 1395 aa, and to Ralstonia solanacearum putative RHS-related transmembrane protein rsp1137 or rs05482 SWALL:Q8XQT2 (EMBL:AL646083) (1517 aa) fasta scores: E(): 3e-74, 32.03% id in 1330 aa.
  
     0.425
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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