STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fepATonB dependent siderophore receptor; Similar to Escherichia coli ferrienterobactin receptor precursor FepA or Fep or FeuB or b0584 SWALL:FEPA_ECOLI (SWALL:P05825) (746 aa) fasta scores: E(): 1.6e-186, 63.68% id in 738 aa, and to Pseudomonas aeruginosa ferric enterobactin receptor precursor pfea or pa2688 SWALL:PFEA_PSEAE (SWALL:Q05098) (746 aa) fasta scores: E(): 1.1e-187, 66.1% id in 717 aa. (747 aa)    
Predicted Functional Partners:
fecA
iron(III) dicitrate transport protein; Similar to Escherichia coli iron FecA or b4291 SWALL:FECA_ECOLI (SWALL:P13036) (774 aa) fasta scores: E(): 0, 80.56% id in 782 aa, and to Pseudomonas aeruginosa FecA or pa3901 SWALL:Q9HXB2 (EMBL:AE004807) (784 aa) fasta scores: E(): 1.6e-196, 62.43% id in 788 aa.
  
   
 0.730
entB
Enterobactin synthetase component B (isochorismatase); Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri isochorismatase EntB or EntG or b0595 or z0737 or ecs0634 or sf0509 SWALL:ENTB_ECOLI (SWALL:P15048) (285 aa) fasta scores: E(): 1.1e-69, 63.63% id in 286 aa.
 
  
 0.724
fhuE
TonB-dependent receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid; Similar to Escherichia coli FhuE receptor precursor FhuE or b1102 SWALL:FHUE_ECOLI (SWALL:P16869) (729 aa) fasta scores: E(): 1.9e-162, 55.86% id in 725 aa.
 
  
 0.720
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.629
fcuA
Putative ferric siderophore TonB-dependent receptor; Similar to Yersinia enterocolitica ferrichrome receptor FcuA precursor FcuA SWALL:FCUA_YEREN (SWALL:Q05202) (758 aa) fasta scores: E(): 2.6e-175, 59.78% id in 756 aa, and to Bordetella bronchiseptica putative ferric siderophore receptor BfrB SWALL:P94265 (EMBL:U77671) (734 aa) fasta scores: E(): 1.2e-99, 39.86% id in 725 aa.
 
  
 0.593
entE
Similar to Escherichia coli enterobactin synthetase component E [includes: 2,3-dihydroxybenzoate-AMP ligase; S-dihydroxybenzoyltransferase] EntE SWALL:ENTE_ECOLI (SWALL:P10378) (536 aa) fasta scores: E(): 1.1e-129, 64.63% id in 540 aa; EC number 7.7.58.
 
  
 0.586
ompW
Outer membrane protein W; Similar to Escherichia coli, and Shigella flexneri outer membrane protein W precursor OmpW or b1256 or sf1259 SWALL:OMPW_ECOLI (SWALL:P21364) (212 aa) fasta scores: E(): 7.2e-54, 62.26% id in 212 aa.
  
   
 0.574
ECA1272
TonB-like protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 0.561
foxA
Ferrioxamine B receptor; Similar to Salmonella typhimurium ferrioxamine B receptor precursor fFoxA or stm0364 SWALL:FOXA_SALTY (SWALL:Q56145) (702 aa) fasta scores: E(): 1.8e-207, 74.35% id in 702 aa.
 
  
 0.557
cusB
Similar to Escherichia coli putative copper efflux system protein CusB precursor CusB or b0574 SWALL:CUSB_ECOLI (SWALL:P77239) (407 aa) fasta scores: E(): 8.2e-44, 37.94% id in 398 aa; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
      
 0.554
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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