Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ECA3938 | amiB | ECA3938 | ECA3937 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | 0.858 |
| ECA3938 | hflX | ECA3938 | ECA3933 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.454 |
| ECA3938 | hfq | ECA3938 | ECA3934 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | Putative phage-related protein (host factor-I protein); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.496 |
| ECA3938 | miaA | ECA3938 | ECA3935 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.830 |
| ECA3938 | mutL | ECA3938 | ECA3936 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.711 |
| ECA3938 | nnrE | ECA3938 | ECA3939 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...] | 0.928 |
| ECA3938 | polA | ECA3938 | ECA0021 | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | Putative DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.453 |
| amiB | ECA3938 | ECA3937 | ECA3938 | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | 0.858 |
| amiB | hflX | ECA3937 | ECA3933 | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.539 |
| amiB | hfq | ECA3937 | ECA3934 | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | Putative phage-related protein (host factor-I protein); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.577 |
| amiB | miaA | ECA3937 | ECA3935 | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.819 |
| amiB | mutL | ECA3937 | ECA3936 | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.793 |
| amiB | nnrE | ECA3937 | ECA3939 | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...] | 0.890 |
| hflX | ECA3938 | ECA3933 | ECA3938 | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | 0.454 |
| hflX | amiB | ECA3933 | ECA3937 | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Similar to Escherichia coli N-acetylmuramoyl-L-alanine amidase AmiB precursor AmiB or b4169 SWALL:AMIB_ECOLI (SWALL:P26365) (445 aa) fasta scores: E(): 5.9e-74, 65.34% id in 430 aa. | 0.539 |
| hflX | hfq | ECA3933 | ECA3934 | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Putative phage-related protein (host factor-I protein); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.761 |
| hflX | miaA | ECA3933 | ECA3935 | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.817 |
| hflX | mutL | ECA3933 | ECA3936 | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.589 |
| hflX | nnrE | ECA3933 | ECA3939 | Putative GTP-binding phage-related protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Putative carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of [...] | 0.629 |
| hfq | ECA3938 | ECA3934 | ECA3938 | Putative phage-related protein (host factor-I protein); RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Conserved hypothetical protein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein yjee or b4168 or z5775 or ecs5144 or sf4323 SWALL:YJEE_ECOLI (SWALL:P31805) (153 aa) fasta scores: E(): 3.4e-43, 73.02% id in 152 aa, and to Salmonella typhi hypothetical protein yjee or sty4714 SWALL:Q8Z189 (EMBL:AL627283) (153 aa) fasta scores: E(): 1.3e-42, 71.71% id in 152 aa. | 0.496 |
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