STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA4077Putative mandelate racemase / muconate lactonizing enzyme; Similar to Agrobacterium tumefaciens isomerase/lactonizing enzyme atu3453 or agr_l_2751 SWALL:Q8UAC1 (EMBL:AE009275) (407 aa) fasta scores: E(): 1.1e-110, 65.17% id in 379 aa, and to Sulfolobus tokodaii putative dgoa protein st2366 SWALL:Q96Y01 (EMBL:AP000989) (396 aa) fasta scores: E(): 2.9e-21, 27.64% id in 369 aa; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (384 aa)    
Predicted Functional Partners:
ECA4076
Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3455 or agr_l_2748 SWALL:Q8UAB9 (EMBL:AE009275) (549 aa) fasta scores: E(): 1.1e-105, 50.65% id in 535 aa, and to Rhizobium meliloti putative dipeptide binding periplasmic protein dppa2 or r02413 or smc01525 SWALL:Q92N26 (EMBL:AL591790) (546 aa) fasta scores: E(): 2.5e-43, 38.6% id in 531 aa.
     0.799
gudD
Glucarate dehydratase; Similar to Escherichia coli, and Escherichia coli O157:H7 glucarate dehydratase GudD or b2787 or z4102 or ecs3647 SWALL:GUDH_ECOLI (SWALL:P76637) (445 aa) fasta scores: E(): 2.3e-156, 84.87% id in 443 aa.
  
  
 0.537
ECA0936
Similar to Escherichia coli glucarate dehydratase related protein GudX or b2788 SWALL:GUDX_ECOLI (SWALL:Q46915) (446 aa) fasta scores: E(): 1.4e-101, 55.7% id in 447 aa; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
 0.503
ECA4072
ABC transporter ATP-binding protein; Similar to Rhizobium meliloti putative dipeptide transport ATP-binding ABC transporter protein dppf2 or r02409 or smc01529 SWALL:Q92N30 (EMBL:AL591790) (255 aa) fasta scores: E(): 4.6e-46, 53.93% id in 254 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3456 or agr_l_2744 SWALL:Q8UAB8 (EMBL:AE009276) (259 aa) fasta scores: E(): 4e-46, 53.06% id in 245 aa.
 
     0.500
garL
2-dehydro-3-deoxyglucarate aldolase; Catalyzes the reversible retro-aldol cleavage of both 5-keto- 4-deoxy-D-glucarate and 2-keto-3-deoxy-D-glucarate to pyruvate and tartronic semialdehyde; Belongs to the HpcH/HpaI aldolase family. KDGluc aldolase subfamily.
 
 
 0.496
hpcH
Similar to Escherichia coli 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase HpcH or HpaI SWALL:HPAI_ECOLI (SWALL:Q47098) (262 aa) fasta scores: E(): 4.9e-22, 32.4% id in 250 aa; Belongs to the HpcH/HpaI aldolase family.
 
 
 0.491
ECA4075
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3459 or agr_l_2740 SWALL:Q8UAB5 (EMBL:AE009276) (360 aa) fasta scores: E(): 2.4e-83, 63.15% id in 342 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppb2 or r02412 or smc01526 SWALL:Q92N27 (EMBL:AL591790) (347 aa) fasta scores: E(): 1.7e-70, 56.4% id in 328 aa.
 
    0.487
gudX
Similar to Escherichia coli glucarate dehydratase related protein GudX or b2788 SWALL:GUDX_ECOLI (SWALL:Q46915) (446 aa) fasta scores: E(): 1.7e-152, 81.83% id in 446 aa.
  
  
 0.475
ECA4074
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3458 or agr_l_2741 SWALL:Q8UAB6 (EMBL:AE009276) (295 aa) fasta scores: E(): 5.9e-75, 64.18% id in 282 aa, and to Rhizobium meliloti putative dipeptide transport system permease ABC transporter protein dppc2 or r02411 or smc01527 SWALL:Q92N28 (EMBL:AL591790) (310 aa) fasta scores: E(): 4.7e-66, 54.8% id in 312 aa.
 
    0.449
ECA0937
Putative transport protein; Similar to Pseudomonas putida major facilitator family transporter pp4758 SWALL:AAN70328 (EMBL:AE016791) (455 aa) fasta scores: E(): 2.5e-78, 48.75% id in 441 aa, and to Agrobacterium vitis putative tartrate transporter ttuB SWALL:TUB4_AGRVI (SWALL:Q44470) (433 aa) fasta scores: E(): 3.3e-58, 39.57% id in 427 aa.
 
  
 0.442
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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