STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
leuOPutative activator protein in leuABCD operon. (314 aa)    
Predicted Functional Partners:
bglJ
Conserved hypothetical regulatory protein.
  
  
 0.779
yjjQ
Conserved hypothetical regulatory protein.
  
  
 0.705
celD
Putative cel operon repressor.
  
  
 0.694
SBG_3317
Putative regulatory protein.
  
     0.515
sbmC
Putative DNA gyrase inhibitory protein.
  
     0.477
SBOV07181_1
Putative pectin esterase precursor.
  
     0.470
slyA
Transcriptional regulator; Transcription regulator that can specifically activate or repress expression of target genes; Belongs to the SlyA family.
   
  
 0.465
SBG_2083
Conserved hypothetical protein; Sequence similarity extends further upstream for these two CDS but the only suitable translational start site for S. bongori would incorporate a stop codon into the sequence. Consequently it is possible that this CDS is a pseudogene.
  
     0.446
SBG_1437
Putative transferase.
  
     0.414
malM
Maltose operon periplasmic protein.
  
     0.408
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.