STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yaePConserved hypothetical protein; Belongs to the UPF0253 family. (66 aa)    
Predicted Functional Partners:
rof
ROF protein.
  
  
 0.841
SBOV10341
Conserved hypothetical protein.
      
 0.833
yacC
Conserved hypothetical protein.
      
 0.828
dinI
Damage-inducible protein.
  
     0.756
yafA
Conserved hypothetical protein; Belongs to the UPF0255 family.
  
     0.737
ycdZ
Putative membrane protein.
  
     0.701
yaiE
Conserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.
  
   
 0.669
cutF
Copper homeostasis protein CutF precursor (lipoprotein nlpE).
 
     0.658
yijD
Putative membrane protein.
  
     0.649
ybfM
Putative outer membrane protein.
  
     0.612
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.