STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbbDFimbrial protein. (196 aa)    
Predicted Functional Partners:
sbbC
Outer membrane fimbrial usher protein.
 
   0.901
sbbB
Fimbrial chaperone protein.
 
   0.869
asmA
Putative outer membrane assembly protein.
  
    0.743
rof
ROF protein.
  
     0.727
smp
Putative membrane protein.
  
     0.696
SBG_0917
Conserved hypothetical phage protein; The Pfam KilA motif thought to define a conserved nucleotide binding domain.
  
     0.676
slt
Lytic murein transglycosylase.
  
     0.656
helD
Helicase IV (75 kD helicase).
  
     0.649
SBG_1482
Putative exported protein.
  
     0.641
lpfC
Outer membrane fimbrial usher protein.
 
   0.633
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.