STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybaEPutative solute-binding protein. (566 aa)    
Predicted Functional Partners:
yobD
Putative membrane protein.
  
     0.750
iap
Alkaline phosphatase isozyme conversion protein.
  
     0.673
ybaJ
Conserved hypothetical protein.
  
     0.672
yiiR
Putative membrane protein.
  
     0.668
aroM
AroM protein.
  
     0.663
yiaH
Putative membrane protein; Responsible for the incorporation of O-acetyl groups into the enterobacterial common antigen (ECA) trisaccharide repeat units.
  
     0.661
ynfB
Putative secreted protein; Belongs to the UPF0482 family.
  
     0.659
SBG_1044
Putative lipoprotein.
  
     0.658
SBOV17171
Conserved hypothetical protein.
  
     0.636
yhjS
Conserved hypothetical protein.
  
     0.627
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.