STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaC_2Putative Isochorismatase family protein. (225 aa)    
Predicted Functional Partners:
yhhW_2
Putative pirin-related protein; Belongs to the pirin family.
 
    0.881
dmlR_8
Putative LysR-family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.657
SBOV14671_1
Conserved hypothetical protein.
 
   
 0.625
msyB
Acidic protein MsyB; multicopy suppressor of SecY.
   
    0.533
SBOV13211
Conserved hypothetical protein.
   
    0.533
elaB_2
Conserved hypothetical protein.
   
    0.533
gntR
Gluconate utilization operon repressor.
      
 0.512
katE
Catalase HPII.
 
   0.454
yjeF
Conserved hypothetical protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair o [...]
   
    0.433
fbaB
Fructose-bisphosphate aldolase class I.
   
    0.428
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.