STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
artAPutative pertussis toxin s1 subunit. (248 aa)    
Predicted Functional Partners:
SBG_1077
Putative pertussis-like toxin subunit.
   
   0.918
cdtB_1
Putative toxin; Similar to many cytolethal distending toxins.
    
   0.902
SBG_1078
Putative pertussis-like toxin subunit.
     
 
0.900
nifU
NifU-like protein; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 
 0.826
artC
Putative bacteriophage protein (pseudogene); Signal peptide predicted for SBG0911 by SignalP 2.0 HMM (Signal peptide probabilty 1.000) with cleavage site probability 0.973 between residues 24 and 25.
       0.689
sufC
Putative ABC transport ATP-binding subunit.
  
  
 0.644
sufB
Conserved hypothetical protein.
  
 
 0.603
sufD
Conserved hypothetical protein.
  
 
 0.603
ybhP
Conserved hypothetical protein.
    
   0.530
sufE
Conserved hypothetical protein; Participates in cysteine desulfuration mediated by SufS. Cysteine desulfuration mobilizes sulfur from L-cysteine to yield L- alanine and constitutes an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Functions as a sulfur acceptor for SufS, by mediating the direct transfer of the sulfur atom from the S-sulfanylcysteine of SufS, an intermediate product of cysteine desulfuration process; Belongs to the SufE family.
  
 
 0.446
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.