STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecM_1Conserved hypothetical protein. (189 aa)    
Predicted Functional Partners:
SBOV06791
Putative lipoprotein.
  
     0.770
ytfB
Conserved hypothetical protein.
  
    0.761
cutC
Putative copper homeostasis protein; Participates in the control of copper homeostasis.
     
 0.752
yjbO
Putative membrane protein.
  
     0.738
yijD
Putative membrane protein.
  
     0.736
smp
Putative membrane protein.
  
     0.734
nlpB
Putative lipoprotein.
  
     0.724
uspB
Universal stress protein B.
  
     0.721
atpI
ATP synthase protein I.
  
     0.719
yjeT
Putative membrane protein.
  
     0.717
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.