STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejBPutative binding-protein-dependent transporter. (364 aa)    
Predicted Functional Partners:
yejE
Putative binding-protein-dependent transporter.
  
 0.998
yejF
Putative ABC-transporter ATP-binding protein.
 
  
 0.996
yejA
Putative transport system periplasmic binding protein.
 
  
 0.995
gsiA_4
Hypothetical ABC transporter ATP-binding protein.
 
     0.659
rtn
Rtn protein.
  
    0.554
dppD
Dipeptide transport ATP-binding protein DppD.
 
   
 0.502
dppC
Dipeptide transport system permease protein DppC.
     0.467
oppC
Oligopeptide transport system permease protein.
   
 0.464
yliD
Hypothetical ABC transporter permease protein.
     0.452
nikC
Putative inner membrane transport protein.
 
     0.417
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.