STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrAMultidrug resistance protein A. (390 aa)    
Predicted Functional Partners:
emrB
Multidrug resistance protein B; Belongs to the major facilitator superfamily.
 
 
 0.998
mprA
Putative transcriptional regulator.
 
  
 0.930
acrA
Acriflavin resistance protein A precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.872
yegN
Putative RND-family transporter protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. MdtB subfamily.
 
   
 0.855
tolC
Outer membrane protein TolC precursor.
 
 
 0.836
yohG
Putative lipoprotein.
 
 
 0.814
oprM
Putative cation transport lipoprotein.
 
 
 0.792
ybjZ
Conserved hypothetical ABC transporter; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.790
mdtC_1
Putative RND-family transporter protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.744
hsrA_1
Putative transmembrane efflux protein; Belongs to the major facilitator superfamily.
 
 
 0.740
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.