STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqcCConserved hypothetical protein. (109 aa)    
Predicted Functional Partners:
yqcB
Putative RNA pseudouridylate synthase.
  
  
 0.916
mioC_1
Conserved hypothetical protein.
       0.759
yohC
Putative membrane protein.
  
     0.565
nfuA
Conserved hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
     0.497
SBG_1137
Conserved hypothetical protein.
  
     0.470
sixA
Phosphohistidine phosphatase.
  
     0.442
ygfY
Conserved hypothetical protein.
  
     0.437
topA
DNA topoisomerase I, omega protein I.
  
     0.426
rdgC
Recombination associated protein; May be involved in recombination; Belongs to the RdgC family.
  
   
 0.422
yciH
Putative translation initiaiton factor.
  
     0.420
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.