STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfA1_2Putative ABC-transport protein, ATP-binding component. (225 aa)    
Predicted Functional Partners:
SBG_2677
Putative membrane protein.
 
 0.999
ecfA1_1
Putative ABC-transport protein, ATP-binding component.
  
 
0.997
SBG_2676
Putative membrane protein.
 
   
 0.917
gsiA_1
Putative ABC transport ATP-binding protein.
 
 
 0.779
SBG_2675
Conserved hypothetical protein.
 
   
 0.767
tcyC
ABC transporter ATP-binding subunit.
 
     0.728
prsD
ABC transporter, ATP-binding component.
  
     0.728
yabJ
Hypothetical ABC transporter; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
 
     0.725
apxIB_3
Putative type-1 secretion protein.
  
     0.710
metN_1
Putative ABC transport ATP-binding subunit.
  
     0.683
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.