STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBG_2723Hypothetical protein; No significant database hits except to the upstream CDS SBG2718 51.466% identity in 307 aa overlap. (384 aa)    
Predicted Functional Partners:
SBG_2721
Hypothetical protein; The similarity to the database match is very low.
 
     0.946
SBG_2717
Hypothetical protein; No significant database hits.
 
     0.829
SBG_2715
Intergrase (remnant).
 
     0.796
SBG_2722
Hypothetical protein; The similarity to the database match is very low.
       0.773
SBG_1847
Hypothetical protein.
  
     0.767
SBG_2720
Hypothetical phage protein.
       0.737
rhsD
RhsD protein; This CDS appears to carry a frameshift mutation following codon 799.
  
     0.727
SBG_1246
Type VI secretion protein (VgrG).
  
     0.724
SBG_2724
Hypothetical protein.
       0.718
SBG_1236
Type VI secretion protein.
  
     0.691
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.