STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ygiBPutative lipoprotein; Belongs to the UPF0441 family. (223 aa)    
Predicted Functional Partners:
gsp_1
Conserved hypothetical protein.
 
  
 0.995
yjfC
Conserved hypothetical protein.
 
  
 0.966
yecF
Conserved hypothetical protein.
  
     0.679
nlpB
Putative lipoprotein.
  
     0.649
rffT
Putative 4-alpha-l-fucosyltransferase; Probably involved in the polymerization of enterobacterial common antigen (ECA) trisaccharide repeat units; Belongs to the WzyE family.
  
     0.649
SBOV06791
Putative lipoprotein.
  
     0.637
cpxP
Extracytoplasmic stress protein for protein-mediated toxicities.
  
    0.610
SBG_2980
Conserved hypothetical protein.
  
     0.602
wzzE
Lipopolysaccharide biosynthesis protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.598
cnu
Conserved hypothetical protein.
  
     0.595
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.