STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gatRGalactitol utilization operon repressor. (257 aa)    
Predicted Functional Partners:
gatD
Galactitol-1-phosphate dehydrogenase.
     
 0.915
gatZ
Tagatose 6-phosphate kinase.
  
  
 0.784
yhbU_4
Putative protease.
      
 0.621
mngA
PTS-family membrane transport protein.
  
  
 0.526
gatC
PTS system, galactitol-specific IIC component.
  
    0.523
gatY
Tagatose-bisphosphate aldolase.
  
  
 0.499
pfkB
6-phosphofructokinase isozyme; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.489
fruK
1-phosphofructokinase.
 
  
 0.474
gatB
PTS system, galactitol-specific IIB component.
       0.438
SBG_2369
Putative acyl-CoA synthetase.
    
   0.410
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.