STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdhDFdhD protein; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family. (267 aa)    
Predicted Functional Partners:
fdhE
FdhE protein; Necessary for formate dehydrogenase activity. Belongs to the FdhE family.
 
  
 0.931
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
     
 0.843
fdhF
Formate dehydrogenase H; This CDS contains a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
 
 
 0.838
fdoG
Formate dehydrogenase-O, major subunit; Carries a UGA stop codon which is readthrough as an opal codon by the selenocysteine tRNA.
 
  
 0.771
moaA
Molybdenum cofactor biosynthesis protein A.
 
  
 0.734
modE
Putative molybdenum transport protein ModE.
 
   
 0.684
mobA
Molybdopterin-guanine dinucleotide biosynthesis protein A; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
 
 
 
 0.646
fdoI
Formate dehydrogenase-O gamma subunit.
 
  
 0.619
selA
L-seryl-tRNA(Ser) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis; Belongs to the SelA family.
 
  
 0.610
moaC
Molybdenum cofactor biosynthesis protein C.
 
  
 0.609
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.