STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjfQPutative transcriptional regulator. (251 aa)    
Predicted Functional Partners:
glcR_3
deoR-family trancriptional regulator.
  
     0.774
deoR
Deoxyribose operon repressor.
  
     0.773
glcR_2
Putative regulatory protein.
  
     0.771
sgaT
Putative transport protein SgaT.
 
   
 0.739
yjfR
Conserved hypothetical protein.
 
  
 0.736
sgaH
Putative hexulose-6-phosphate synthase.
 
   
 0.731
sgaU
Conserved hypothetical protein.
 
   
 0.721
sgaB
Putative PTS system IIB protein.
 
   
 0.695
sgaE
Putative class II aldolase.
  
  
 0.635
nfuA
Conserved hypothetical protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
      
 0.531
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.