STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycdT_2Putative membrane protein. (354 aa)    
Predicted Functional Partners:
yhjK
Conserved hypothetical protein.
 
 
 0.966
yfgF_2
Putative membrane protein.
 
  
 0.913
yfeA
Putative membrane protein.
 
  
 0.849
ylaB
Uncharacterized protein ylaB; Putative exported protein.
   
 0.841
SBOV18551_2
Conserved hypothetical protein.
 
    0.807
rtn
Rtn protein.
 
  
 0.806
yjcC
Putative exported protein.
   
 0.805
yhjH
Conserved hypothetical protein.
  
  
 0.715
arcB
Aerobic respiration control sensor protein.
 
 0.644
yegE
Putative membrane protein.
 
 
0.603
Your Current Organism:
Salmonella bongori
NCBI taxonomy Id: 218493
Other names: S. bongori NCTC 12419, Salmonella bongori NCTC 12419, Salmonella bongori str. NCTC 12419, Salmonella bongori strain NCTC 12419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.