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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUB0505Similar to Streptococcus mutans putative immunity protein, blpl-like. UniProt:Q8DS96_STRMU (EMBL:AE015016) (133 aa) fasta scores: E()=9e-06, 34.307% id in 137 aa. CDS contains frameshifts after codons 8, 62 and 103. (88 aa)    
Predicted Functional Partners:
SUB0506
Putative bacteriocin.
     
 0.860
SUB0509
Putative bacteriocin.
     
 0.590
SUB1426
Conserved hypothetical protein.
      
 0.449
ublA
Response regulator protein (pseudogene); HMMPfam hit to PF04397, LytTr DNA-binding domain, score 1.8e-25.
      
 0.445
ublE
Putative membrane protein.
      
 0.445
pedA
Putative membrane protein; Similar to Streptococcus mutans putative immunity protein, blpl-like. UniProt:Q8DS96_STRMU (EMBL:AE015016) (133 aa) fasta scores: E()=1.2e-06, 33.577% id in 137 aa. CDS contains a frameshift after codon 2.
      
 0.445
SUB0508
Putative membrane protein.
       0.439
Your Current Organism:
Streptococcus uberis
NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J
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