SUB0726 protein (Streptococcus uberis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SUB0726

Conserved hypothetical protein. (107 aa)

Predicted Functional Partners:

rpmA

0.976

rplU

0.959

SUB1467

0.671

rpsB

0.648

rplJ

0.620

rplC

0.538

rplA

0.530

SUB0728

0.518

lspA

0.518

SUB0730

0.518

Your Current Organism:

Streptococcus uberis

NCBI taxonomy Id: 218495
Other names: S. uberis 0140J, Streptococcus uberis 0140J, Streptococcus uberis str. 0140J

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SUB0726	SUB0728	SUB0726	SUB0728	Conserved hypothetical protein.	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	0.518
SUB0726	SUB0730	SUB0726	SUB0730	Conserved hypothetical protein.	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.518
SUB0726	SUB1467	SUB0726	SUB1467	Conserved hypothetical protein.	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein.	0.671
SUB0726	lspA	SUB0726	SUB0729	Conserved hypothetical protein.	Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.	0.518
SUB0726	rplA	SUB0726	SUB0482	Conserved hypothetical protein.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.530
SUB0726	rplC	SUB0726	SUB0068	Conserved hypothetical protein.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.538
SUB0726	rplJ	SUB0726	SUB0777	Conserved hypothetical protein.	50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.	0.620
SUB0726	rplU	SUB0726	SUB0725	Conserved hypothetical protein.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.959
SUB0726	rpmA	SUB0726	SUB0727	Conserved hypothetical protein.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.976
SUB0726	rpsB	SUB0726	SUB1754	Conserved hypothetical protein.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.648
SUB0728	SUB0726	SUB0728	SUB0726	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	Conserved hypothetical protein.	0.518
SUB0728	SUB0730	SUB0728	SUB0730	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	0.807
SUB0728	lspA	SUB0728	SUB0729	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.	0.800
SUB0728	rplU	SUB0728	SUB0725	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.537
SUB0728	rpmA	SUB0728	SUB0727	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.578
SUB0730	SUB0726	SUB0730	SUB0726	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Conserved hypothetical protein.	0.518
SUB0730	SUB0728	SUB0730	SUB0728	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.	0.807
SUB0730	lspA	SUB0730	SUB0729	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.	0.875
SUB0730	rplC	SUB0730	SUB0068	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.608
SUB0730	rplU	SUB0730	SUB0725	Putative RNA pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.834