Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SUB0704 | rimP | SUB0704 | SUB1470 | GtrA-like protein. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.449 |
SUB0704 | trmB | SUB0704 | SUB1471 | GtrA-like protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.540 |
SUB1387 | SUB1467 | SUB1387 | SUB1467 | Putative ribosomal RNA small subunit methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | 0.639 |
SUB1387 | rimP | SUB1387 | SUB1470 | Putative ribosomal RNA small subunit methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.636 |
SUB1387 | trmB | SUB1387 | SUB1471 | Putative ribosomal RNA small subunit methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.692 |
SUB1387 | truA | SUB1387 | SUB0317 | Putative ribosomal RNA small subunit methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.453 |
SUB1387 | truB | SUB1387 | SUB0970 | Putative ribosomal RNA small subunit methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.846 |
SUB1467 | SUB1387 | SUB1467 | SUB1387 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | Putative ribosomal RNA small subunit methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.639 |
SUB1467 | SUB1472 | SUB1467 | SUB1472 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | Phosphotransferase enzyme family protein. | 0.409 |
SUB1467 | rimP | SUB1467 | SUB1470 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.864 |
SUB1467 | trmB | SUB1467 | SUB1471 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.607 |
SUB1467 | truB | SUB1467 | SUB0970 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.984 |
SUB1472 | SUB1467 | SUB1472 | SUB1467 | Phosphotransferase enzyme family protein. | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein. | 0.409 |
SUB1472 | SUB1473 | SUB1472 | SUB1473 | Phosphotransferase enzyme family protein. | ABC transporter protein EcsB. | 0.758 |
SUB1472 | SUB1474 | SUB1472 | SUB1474 | Phosphotransferase enzyme family protein. | ABC transporter ATP-binding protein. | 0.622 |
SUB1472 | rimP | SUB1472 | SUB1470 | Phosphotransferase enzyme family protein. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.482 |
SUB1472 | trmB | SUB1472 | SUB1471 | Phosphotransferase enzyme family protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.812 |
SUB1473 | SUB1472 | SUB1473 | SUB1472 | ABC transporter protein EcsB. | Phosphotransferase enzyme family protein. | 0.758 |
SUB1473 | SUB1474 | SUB1473 | SUB1474 | ABC transporter protein EcsB. | ABC transporter ATP-binding protein. | 0.891 |
SUB1473 | rimP | SUB1473 | SUB1470 | ABC transporter protein EcsB. | Conserved hypothetical protein; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.414 |
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