STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaBRhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L- mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1-hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate; Belongs to the rhamnulokinase family (489 aa)    
Predicted Functional Partners:
rhaA
annotation not available
 
 0.999
rhaR
HTH-type transcriptional activator RhaR; Activates expression of the rhaSR operon in response to L-rhamnose
 
  
 0.950
rhaS
HTH-type transcriptional activator RhaS; Activates expression of the rhaBAD and rhaT operons
 
  
 0.921
rhaT
L-rhamnose-proton symporter; Uptake of L-rhamnose across the boundary membrane with the concomitant transport of protons into the cell (symport system)
 
  
 0.920
lyxK
annotation not available
   
 
0.905
rhaM
L-rhamnose mutarotase; Involved in the anomeric conversion of L-rhamnose
 
   
 0.881
fucI
L-fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L-fuculose
 
   
 0.751
nuoM
annotation not available
      
 0.633
yiaS
annotation not available
  
  
 0.631
araB
annotation not available
     
 0.624
Your Current Organism:
Salmonella enterica CT18
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica CT18, Salmonella enterica Typhi, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
Server load: low (11%) [HD]