STRINGSTRING
spiA protein (Salmonella enterica CT18) - STRING interaction network
"spiA" - Outer membrane secretory protein in Salmonella enterica CT18
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spiAOuter membrane secretory protein (497 aa)    
Predicted Functional Partners:
ssaD
Pathogenicity island protein (403 aa)
 
   
  0.995
ssaJ
Pathogenicity island lipoprotein (249 aa)
 
   
  0.982
epaR
Type III secretion protein (259 aa)
 
   
  0.981
sscA
Type III secretion system chaperone protein (157 aa)
 
   
  0.981
ssaV
Type III secretion protein (681 aa)
 
   
  0.978
ssaE
Secretion system protein (80 aa)
   
        0.974
ssaS
Type III secretion protein (88 aa)
 
   
  0.972
spiC
Pathogenicity island 2 secreted effector protein; Putative virulence protein (127 aa)
   
   
  0.971
spaS
Secretory protein (356 aa)
 
 
 
  0.964
sscB
Pathogenicity island protein (144 aa)
 
   
  0.962
Your Current Organism:
Salmonella enterica CT18
NCBI taxonomy Id: 220341
Other names: Bacillus typhi, Bacterium (subgen. Eberthella) typhi, S. enterica subsp. enterica serovar Typhi, S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella choleraesuis serovar Typhi, Salmonella choleraesuis typhi, Salmonella enterica CT18, Salmonella enterica ser. typhi, Salmonella enterica serotype Typhi, Salmonella enterica serovar Typhi, Salmonella enterica subsp. enterica serovar Typhi, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi, Salmonella typhi CT18
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