STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY2561Putative aminotransferase; Similar to Methylobacillus flagellatum aspartate aminotransferase aat TR:Q9RAN0 (EMBL:L78665) (429 aa) fasta scores: E(): 0, 62.1% id in 404 aa and to many putative aminotransferases; Orthologue of E. coli YFBQ_ECOLI; Fasta hit to YFBQ_ECOLI (405 aa), 97% identity in 404 aa overlap. (404 aa)    
Predicted Functional Partners:
STY1000
Aspartate aminotransferase; Fasta hit to TYRB_ECOLI (397 aa), 43% identity in 397 aa overlap; Orthologue of E. coli aspC (AAT_ECOLI); Fasta hit to AAT_ECOLI (396 aa), 96% identity in 396 aa overlap; Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.
   
 0.933
STY3653
Dihydroxyacid dehydratase; Similar to Escherichia coli dihydroxy-acid dehydratase SW:ILVD_ECOLI () (605 aa) fasta scores: E(): 0, 93.9% id in 602 aa and to Haemophilus influenzae dihydroxy-acid dehydratase IlvD SW:ILVD_HAEIN (P44851) (612 aa) fasta scores: E(): 0, 76.9% id in 614 aa. Note that the N-terminus of this CDS is more similar to the H. influenzae IlvD; Fasta hit to YAGF_ECOLI (655 aa), 30% identity in 543 aa overlap; Orthologue of E. coli ilvD (ILVD_ECOLI); Fasta hit to ILVD_ECOLI (605 aa), 94% identity in 602 aa overlap; Belongs to the IlvD/Edd family.
   
 
 0.913
STY3654
Branched-chain amino-acid aminotransferase; Acts on leucine, isoleucine and valine.
  
 
 0.913
STY0132
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
 
 0.912
STY3130
N-acetylglutamate synthase; Orthologue of E. coli argA (ARGA_ECOLI); Fasta hit to ARGA_ECOLI (443 aa), 94% identity in 443 aa overlap; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.910
STY4133
Valine--pyruvate aminotransferase; Orthologue of E. coli avtA (AVTA_ECOLI); Fasta hit to AVTA_ECOLI (417 aa), 92% identity in 415 aa overlap.
     
 0.910
STY1815
NADP-specific glutamate dehydrogenase; Catalyzes the reversible oxidative deamination of glutamate to alpha-ketoglutarate and ammonia.
  
 
 0.907
STY0776
Succinate dehydrogenase hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH).
  
  
  0.833
STY1278
Isocitrate dehydrogenase; Orthologue of E. coli icdA (IDH_ECOLI); Fasta hit to IDH_ECOLI (416 aa), 97% identity in 416 aa overlap.
   
 0.833
STY1653
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
    
 0.816
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.