STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY3851Ribonuclease BN; Similar to Escherichia coli ribonuclease BN reqiured for the maturation of tRNA molecules SW:RBN_ECOLI (P32146) (290 aa) fasta scores: E(): 0, 93.8% id in 290 aa. (290 aa)    
Predicted Functional Partners:
STY3852
Putative haloacid dehalogenase-like hydrolase; Orthologue of E. coli yihX (YIHX_ECOLI); Fasta hit to YIHX_ECOLI (199 aa), 89% identity in 199 aa overlap.
 
    0.962
STY3850
Conserved hypothetical protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family.
  
    0.875
STY3849
Putative acetyltransferase; Orthologue of E. coli yiiD (YIID_ECOLI); Fasta hit to YIID_ECOLI (329 aa), 95% identity in 313 aa overlap.
       0.835
STY3241
Similar to Escherichia coli hypothetical protein YqgB SW:YQGB_ECOLI (P46877) (48 aa) fasta scores: E(): 4.6e-10, 73.8% id in 42 aa.
      
 0.805
STY4681
Putative transcriptional regulator; Similar to Escherichia coli hypothetical protein YjdC yjdC SW:YJDC_ECOLI (P36656) (191 aa) fasta scores: E(): 0, 87.4% id in 191 aa. Pfam match to entry PF00440 tetR, Bacterial regulatory proteins, tetR family, score 23.80, E-value 0.00021.
      
 0.538
STY3854
Putative sugar kinase; Phosphorylates 6-deoxy-6-sulfo-D-fructose (SF) to 6-deoxy-6- sulfo-D-fructose 1-phosphate (SFP); Belongs to the carbohydrate kinase PfkB family.
       0.508
mviM
Similar to Salmonella typhimurium virulence factor MviM mviM SW:MVIM_SALTY (P37168) (307 aa) fasta scores: E(): 0, 97.4% id in 307 aa; Orthologue of E. coli mviM (MVIM_ECOLI); Fasta hit to MVIM_ECOLI (307 aa), 81% identity in 307 aa overlap.
   
  
 0.479
STY3853
Putative DeoR-family transcriptional regulator; Similar to Escherichia coli glycerol-3-phosphate regulon repressor glpR SW:GLPR_ECOLI (P09392) (252 aa) fasta scores: E(): 0, 43.4% id in 244 aa and Escherichia coli putative DEOR-type transcriptional regulator YihW (YIHW_ECOLI); Fasta hit to YIHW_ECOLI (269 aa), 89% identity in 255 aa overlap.
       0.450
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.