STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
STY4137D-xylose isomerase; Orthologue of E. coli xylA (XYLA_ECOLI); Fasta hit to XYLA_ECOLI (440 aa), 92% identity in 440 aa overlap; Belongs to the xylose isomerase family. (440 aa)    
Predicted Functional Partners:
STY4138
Xylulose kinase; Orthologue of E. coli xylB (XYLB_ECOLI); Fasta hit to XYLB_ECOLI (484 aa), 86% identity in 484 aa overlap.
 
 
 0.995
STY2439
PTS system, fructose-specific IIBC component; Fasta hit to PTVB_ECOLI (485 aa), 34% identity in 478 aa overlap; Orthologue of E. coli fruA (PTFB_ECOLI); Fasta hit to PTFB_ECOLI (563 aa), 94% identity in 507 aa overlap.
     
 0.937
STY3437
Similar to Escherichia coli PTS system, fructose-like-1 IIBC component FrvB SW:PTVB_ECOLI (P32154) (485 aa) fasta scores: E(): 0, 32.4% id in 475 aa. Note, like the example given, the predicted product of this CDS contains only one hydrophilic IIB domain. Contains possible membrane spanning hydrophobic domains; Fasta hit to PTVB_ECOLI (485 aa), 32% identity in 474 aa overlap; Paralogue of E. coli fruA (PTFB_ECOLI); Fasta hit to PTFB_ECOLI (563 aa), 42% identity in 471 aa overlap.
     
 0.930
STY3925
Similar to Escherichia coli PTS system, fructose-specific IIBC component SW:PTFB_ECOLI () (563 aa) fasta scores: E(): 0, 65.5% id in 458 aa. Note the product of this CDS lacks the first of the two E. coli EIIB transferase domains; Fasta hit to PTVB_ECOLI (485 aa), 35% identity in 450 aa overlap; Paralogue of E. coli fruA (PTFB_ECOLI); Fasta hit to PTFB_ECOLI (563 aa), 66% identity in 458 aa overlap.
     
 0.930
STY0426
Similar to Escherichia coli hypothetical 32.5 kDa protein in arom-araj intergenic region yajF SW:YAJF_ECOLI (P23917; P75705; P71316) (302 aa) fasta scores: E(): 0, 87.7% id in 300 aa, and to Staphylococcus xylosus glucokinase glkA SW:GLK_STAXY (Q56198) (328 aa) fasta scores: E(): 3.6e-16, 28.4% id in 320 aa; Fasta hit to YCFX_ECOLI (303 aa), 39% identity in 298 aa overlap; Orthologue of E. coli yajF (YAJF_ECOLI); Fasta hit to YAJF_ECOLI (302 aa), 88% identity in 300 aa overlap.
    
 0.909
STY0119
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
  
   
 0.837
STY4136
Xylose operon regulatory protein; Orthologue of E. coli xylR (XYLR_ECOLI); Fasta hit to XYLR_ECOLI (392 aa), 92% identity in 392 aa overlap.
 
   
 0.835
STY2644
Glucokinase; Orthologue of E. coli glk (HXKG_ECOLI); Fasta hit to HXKG_ECOLI (321 aa), 94% identity in 321 aa overlap; Belongs to the bacterial glucokinase family.
     
 0.812
STY3827
L-rhamnose isomerase; Orthologue of E. coli rhaA (RHAA_ECOLI); Fasta hit to RHAA_ECOLI (419 aa), 94% identity in 418 aa overlap.
      
 0.580
STY3117
L-fuculose kinase; Catalyzes the phosphorylation of L-fuculose. Belongs to the FGGY kinase family.
  
  
 0.572
Your Current Organism:
Salmonella enterica Typhi
NCBI taxonomy Id: 220341
Other names: S. enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi CT18, Salmonella enterica subsp. enterica serovar Typhi str. CT18, Salmonella enterica subsp. enterica serovar Typhi strain CT18, Salmonella typhi CT18
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