PFL_0341 protein (Pseudomonas protegens) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PFL_0341

Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. (230 aa)

Predicted Functional Partners:

PFL_0342

0.984

PFL_0343

0.984

PFL_0340

0.978

PFL_0248

0.877

PFL_1041

0.856

PFL_2360

0.842

aotP

0.834

PFL_3058

0.831

PFL_5020

0.831

hisP

0.830

Your Current Organism:

Pseudomonas protegens

NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PFL_0248	PFL_0340	PFL_0248	PFL_0340	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.875
PFL_0248	PFL_0341	PFL_0248	PFL_0341	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.877
PFL_0248	PFL_0343	PFL_0248	PFL_0343	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005.	0.650
PFL_0248	PFL_3058	PFL_0248	PFL_3058	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005.	0.660
PFL_0248	PFL_5020	PFL_0248	PFL_5020	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.620
PFL_0248	aotP	PFL_0248	PFL_4517	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Arginine/ornithine ABC transporter, ATP-binding protein AotP; Identified by similarity to SP:O30506; match to protein family HMM PF00005.	0.657
PFL_0248	hisP	PFL_0248	PFL_1263	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	Histidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005.	0.656
PFL_0340	PFL_0248	PFL_0340	PFL_0248	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	0.875
PFL_0340	PFL_0341	PFL_0340	PFL_0341	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.978
PFL_0340	PFL_0342	PFL_0340	PFL_0342	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to GB:AAG04277.1; match to protein family HMM PF00497.	0.983
PFL_0340	PFL_0343	PFL_0340	PFL_0343	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005.	0.986
PFL_0340	PFL_1041	PFL_0340	PFL_1041	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Lysine-arginine-ornithine binding periplasmic protein; Identified by similarity to SP:P02911; match to protein family HMM PF00497; match to protein family HMM TIGR01096.	0.889
PFL_0340	PFL_2360	PFL_0340	PFL_2360	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.	0.885
PFL_0340	PFL_3058	PFL_0340	PFL_3058	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005.	0.844
PFL_0340	PFL_5020	PFL_0340	PFL_5020	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.	0.842
PFL_0340	aotP	PFL_0340	PFL_4517	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Arginine/ornithine ABC transporter, ATP-binding protein AotP; Identified by similarity to SP:O30506; match to protein family HMM PF00005.	0.847
PFL_0340	hisP	PFL_0340	PFL_1263	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Histidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005.	0.842
PFL_0341	PFL_0248	PFL_0341	PFL_0248	Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.	0.877
PFL_0341	PFL_0340	PFL_0341	PFL_0340	Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, permease protein; Identified by similarity to GB:AAG04279.1; match to protein family HMM PF00528; match to protein family HMM TIGR01726.	0.978
PFL_0341	PFL_0342	PFL_0341	PFL_0342	Amino acid ABC transporter, permease protein; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.	Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to GB:AAG04277.1; match to protein family HMM PF00497.	0.984

page 1 of 4

Server load: medium (76%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About