STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_0970MFS transporter, aromatic acid:H+ symporter (AAHS) family; Identified by match to protein family HMM PF00083; match to protein family HMM PF07690. (455 aa)    
Predicted Functional Partners:
PFL_1306
Transporter, major facilitator family; Identified by match to protein family HMM PF07690.
  
     0.620
maiA
Maleylacetoacetate isomerase; Identified by similarity to SP:O43708; match to protein family HMM PF02798; match to protein family HMM TIGR01262.
  
    0.496
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
       0.473
fahA
Fumarylacetoacetase; Identified by similarity to SP:P25093; match to protein family HMM PF01557; match to protein family HMM PF09298; match to protein family HMM TIGR01266.
       0.473
antB
Anthranilate 1,2-dioxygenase, small subunit; Identified by similarity to GB:AAC34814.1; match to protein family HMM PF00866; match to protein family HMM TIGR03231.
 
  
 0.466
xylX
Toluate 1,2-dioxygenase subunit alpha; Identified by similarity to SP:P23099; match to protein family HMM PF00355; match to protein family HMM PF00848; match to protein family HMM TIGR03229.
 
     0.465
xylL
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Identified by similarity to SP:P23102; match to protein family HMM PF00106; match to protein family HMM PF08659; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
   
 0.458
antA
Anthranilate 1,2-dioxygenase, large subunit; Identified by similarity to GB:AAC34813.1; match to protein family HMM PF00355; match to protein family HMM PF00848; match to protein family HMM TIGR03228.
 
     0.435
xylY
Toluate 1,2-dioxygenase subunit beta; Identified by similarity to SP:P23100; match to protein family HMM PF00866; match to protein family HMM TIGR03232.
 
  
 0.435
catC
Muconolactone delta-isomerase; Identified by similarity to SP:P00948; match to protein family HMM PF02426; match to protein family HMM TIGR03221; Belongs to the muconolactone Delta-isomerase family.
 
   
 0.434
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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