Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PFL_4911 | PFL_5778 | PFL_4911 | PFL_5778 | Conserved hypothetical protein. | Conserved hypothetical protein; Identified by similarity to SP:P42597; match to protein family HMM PF01863. | 0.576 |
PFL_4911 | rlmF | PFL_4911 | PFL_1062 | Conserved hypothetical protein. | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.503 |
PFL_5778 | PFL_4911 | PFL_5778 | PFL_4911 | Conserved hypothetical protein; Identified by similarity to SP:P42597; match to protein family HMM PF01863. | Conserved hypothetical protein. | 0.576 |
PFL_5778 | rlmF | PFL_5778 | PFL_1062 | Conserved hypothetical protein; Identified by similarity to SP:P42597; match to protein family HMM PF01863. | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.429 |
purL | rlmF | PFL_1076 | PFL_1062 | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.492 |
purL | valS | PFL_1076 | PFL_1063 | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.667 |
rlmF | PFL_4911 | PFL_1062 | PFL_4911 | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | Conserved hypothetical protein. | 0.503 |
rlmF | PFL_5778 | PFL_1062 | PFL_5778 | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | Conserved hypothetical protein; Identified by similarity to SP:P42597; match to protein family HMM PF01863. | 0.429 |
rlmF | purL | PFL_1062 | PFL_1076 | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.492 |
rlmF | valS | PFL_1062 | PFL_1063 | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | 0.513 |
valS | purL | PFL_1063 | PFL_1076 | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.667 |
valS | rlmF | PFL_1063 | PFL_1062 | valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. | Conserved hypothetical protein; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.513 |