STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3018Identified by match to protein family HMM PF00378. (277 aa)    
Predicted Functional Partners:
PFL_2166
3-hydroxybutyryl-CoA dehydrogenase; Identified by similarity to SP:P45856; match to protein family HMM PF00725; match to protein family HMM PF02737.
 0.987
paaB
Phenylacetate degradation enoyl-CoA hydratase PaaB; Identified by match to protein family HMM PF00378; match to protein family HMM TIGR02280.
 
0.965
fadE
Acyl-coenzyme A dehydrogenase; Identified by similarity to SP:Q8ZRJ7; match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028; match to protein family HMM PF09317.
  
 0.963
fadE-2
acyl-CoA dehydrogenase; Identified by similarity to SP:Q8ZRJ7; match to protein family HMM PF00441; match to protein family HMM PF02771; match to protein family HMM PF08028; match to protein family HMM PF09317.
  
 0.963
acdA_2
acyl-CoA dehydrogenase; Identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
  0.951
PFL_1840
Identified by match to protein family HMM PF00378.
  
  
  0.950
gcdH
glutaryl-CoA dehydrogenase; Identified by similarity to SP:Q92947; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
 
  0.948
PFL_2678
Identified by match to protein family HMM PF01575.
  
 0.942
liuA
isovaleryl-CoA dehydrogenase LiuA; Identified by similarity to GB:AAG05403.1; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
  
  0.941
fadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
0.940
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.