STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PFL_3060Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726. (241 aa)    
Predicted Functional Partners:
PFL_3058
Amino acid ABC transporter, ATP-binding protein; Identified by similarity to SP:O30506; match to protein family HMM PF00005.
 
 0.985
PFL_3061
Amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by match to protein family HMM PF00497.
 0.981
PFL_3059
Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; Identified by match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
0.977
hisP
Histidine ABC transporter, ATP-binding protein HisP; Identified by similarity to SP:P07109; match to protein family HMM PF00005.
 
 0.966
hisJ
Histidine ABC transporter, periplasmic histidine-binding protein HisJ; Identified by similarity to SP:P0AEU0; match to protein family HMM PF00497; Belongs to the bacterial solute-binding protein 3 family.
 0.958
hisQ
Histidine ABC transporter, permease protein HisQ; Identified by similarity to SP:P52094; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
  
  
 
0.901
hisM
Histidine ABC transporter, permease protein HisM; Identified by similarity to SP:P0AEU3; match to protein family HMM PF00528; match to protein family HMM TIGR01726.
 
 
0.900
PFL_0248
Polar amino acid ABC transporter, periplasmic amino acid-binding protein; Identified by similarity to SP:P0AEM9; match to protein family HMM PF00497.
 
 0.892
PFL_1041
Lysine-arginine-ornithine binding periplasmic protein; Identified by similarity to SP:P02911; match to protein family HMM PF00497; match to protein family HMM TIGR01096.
 
 0.841
aotP
Arginine/ornithine ABC transporter, ATP-binding protein AotP; Identified by similarity to SP:O30506; match to protein family HMM PF00005.
  
 0.837
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.