STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
cyoE_1Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (295 aa)    
Predicted Functional Partners:
cyoA_2
Cytochrome o ubiquinol oxidase, subunit II; Identified by similarity to SP:P18400; match to protein family HMM PF00116; match to protein family HMM PF06481; match to protein family HMM TIGR01433.
 
  
 0.985
cyoC_2
Cytochrome o ubiquinol oxidase, subunit III; Identified by similarity to SP:P18402; match to protein family HMM PF00510; match to protein family HMM TIGR02842.
 
  
 0.981
cyoB_2
Cytochrome o ubiquinol oxidase, subunit I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; match to protein family HMM TIGR02843; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.981
ctaG
Putative cytochrome c oxidase assembly protein; Identified by similarity to SP:P56940; match to protein family HMM PF04442.
  
 0.977
PFL_0068
Putative cytochrome oxidase assembly protein; Identified by match to protein family HMM PF02628.
  
 0.976
cyoD_2
Cytochrome o ubiquinol oxidase, subunit IV; Identified by similarity to SP:P18403; match to protein family HMM PF03626; match to protein family HMM TIGR02847.
 
  
 0.973
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
   
 
 0.921
cyoB_1
Cytochrome o ubiquinol oxidase, subunit I; Identified by similarity to SP:P18401; match to protein family HMM PF00115; match to protein family HMM TIGR02843; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.920
cyoC_1
Cytochrome o ubiquinol oxidase, subunit III; Identified by similarity to SP:P18402; match to protein family HMM PF00510; match to protein family HMM TIGR02842.
 
  
 0.919
cyoE_2
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
  
  
 
0.917
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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