STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdcGholo-ACP synthase, malonate decarboxylase-specific; Transfers 2'-(5-triphosphoribosyl)-3'-dephosphocoenzyme-A to the apo-[acyl-carrier-protein] of the malonate decarboxylase to yield holo-[acyl-carrier-protein]; Belongs to the MdcG family. (208 aa)    
Predicted Functional Partners:
mdcB
triphosphoribosyl-dephospho-CoA synthase; Involved in the formation of 2-(5''-phosphoribosyl)-3'- dephosphocoenzyme-A, the prosthetic group of the acyl-carrier protein of the malonate decarboxylase; Belongs to the CitG/MdcB family.
 
 
 0.994
mdcC
Malonate decarboxylase acyl carrier protein; Subunit of malonate decarboxylase, it is an acyl carrier protein to which acetyl and malonyl thioester residues are bound via a 2'-(5''-phosphoribosyl)-3'-dephospho-CoA prosthetic group and turn over during the catalytic mechanism.
 
  
 0.988
mdcE
Malonate decarboxylase, gamma subunit; Identified by similarity to GB:BAA36208.1; match to protein family HMM PF06833; match to protein family HMM TIGR03134.
 
  
 0.984
mdcA
Malonate decarboxylase, alpha subunit; Identified by match to protein family HMM TIGR01110.
 
  
 0.971
mdcD
Malonate decarboxylase, beta subunit; Identified by match to protein family HMM TIGR03133.
 
  
 0.967
mdcH
Malonate decarboxylase, epsilon subunit; Identified by similarity to GB:BAA36210.1; match to protein family HMM PF00698; match to protein family HMM TIGR03131.
 
  
 0.960
madL
Malonate transporter, MadL subunit; Identified by similarity to GB:AAC45407.1; match to protein family HMM PF03817; match to protein family HMM TIGR00807.
 
    0.918
madM
Malonate transporter, MadM subunit; Identified by similarity to GB:AAC45408.1; match to protein family HMM PF03818; match to protein family HMM TIGR00808.
 
     0.875
mdcR
Malonate utilization transcriptional regulator; Identified by similarity to GB:AAC45461.1; match to protein family HMM PF00126; match to protein family HMM PF03466; Belongs to the LysR transcriptional regulatory family.
  
     0.757
PFL_5821
Conserved hypothetical protein; Identified by match to protein family HMM PF08719; match to protein family HMM TIGR02464.
       0.498
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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