STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tagTPutative Lol-like lipoprotein-translocating system, ATP-binding protein TagT; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03463.1; match to protein family HMM PF00005. (238 aa)    
Predicted Functional Partners:
tagS
Putative Lol-like lipoprotein-translocating system, transmembrane protein TagS; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03462.1; match to protein family HMM PF02687.
 
 
 0.952
tagR
Type VI secretion posttranslational regulatory protein TagR; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03461.1; match to protein family HMM PF03781.
 
    0.944
ppkA
Serine/threonine protein kinase PpkA; Identified by similarity to GB:AAG03464.1; match to protein family HMM PF00069.
 
  
 0.925
tagF
Type VI secretion-associated protein TagF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03466.1; match to protein family HMM TIGR03373.
  
    0.922
pppA
Serine/threonine phosphoprotein phosphatase PppA; Identified by similarity to GB:AAG03465.1; match to protein family HMM PF00481.
  
  
 0.918
tssL
Type VI secretion protein TssL; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03468.1; match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350.
  
    0.855
tssM
Type VI secretion protein TssM; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03467.1; match to protein family HMM PF06744; match to protein family HMM PF06761; match to protein family HMM TIGR03348.
  
    0.842
tssK
Type VI secretion protein TssK; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03469.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353.
  
    0.822
tssJ
Type VI secretion lipoprotein TssJ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03470.1; match to protein family HMM TIGR03352.
  
    0.782
tagQ
Putative type VI secretion-associated lipoprotein TagQ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03460.1; match to protein family HMM PF05433.
  
 
 0.764
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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