STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssAType VI secretion protein TssA; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03472.1; match to protein family HMM PF06812; match to protein family HMM TIGR03363. (339 aa)    
Predicted Functional Partners:
tssB
Type VI secretion protein TssB; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03473.1; match to protein family HMM PF05591; match to protein family HMM TIGR03358.
 
  
 0.991
tssG
Type VI secretion protein TssG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03479.1; match to protein family HMM PF06996; match to protein family HMM TIGR03347.
 
  
 0.991
tssC
Type VI secretion protein TssC; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03474.1; match to protein family HMM PF05943; match to protein family HMM TIGR03355.
 
  
 0.978
tssF
Type VI secretion protein TssF; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03478.1; match to protein family HMM PF05947; match to protein family HMM TIGR03359.
 
  
 0.976
tssE
Type VI secretion protein TssE; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03477.1; match to protein family HMM PF04965; match to protein family HMM TIGR03357.
 
  
 0.975
hcp
Type VI secretion system effector Hcp; Identified by similarity to GB:AAG03475.1; match to protein family HMM PF05638; match to protein family HMM TIGR03344.
 
  
 0.973
tssK
Type VI secretion protein TssK; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03469.1; match to protein family HMM PF05936; match to protein family HMM TIGR03353.
 
  
 0.968
tssL
Type VI secretion protein TssL; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03468.1; match to protein family HMM PF00691; match to protein family HMM TIGR03349; match to protein family HMM TIGR03350.
 
  
 0.963
vgrG
Type VI secretion protein VgrG; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03481.1; match to protein family HMM PF04524; match to protein family HMM TIGR01646; match to protein family HMM TIGR03361.
 
  
 0.963
tssJ
Type VI secretion lipoprotein TssJ; See Hsu et. al. 2009 (PMID: 19400797) for more information; identified by similarity to GB:AAG03470.1; match to protein family HMM TIGR03352.
 
  
 0.952
Your Current Organism:
Pseudomonas protegens
NCBI taxonomy Id: 220664
Other names: P. protegens Pf-5, Pseudomonas fluorescens Pf-5, Pseudomonas protegens Pf-5, Pseudomonas protegens str. Pf-5, Pseudomonas protegens strain Pf-5, Pseudomonas sp. Pf-5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.