STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lp_2162Extracellular protein, NlpC/P60 family,gamma-D-glutamate-meso-diaminopimelate muropeptidase. (496 aa)    
Predicted Functional Partners:
lytH
N-acetylmuramoyl-L-alanine amidase; Probably involved in cell-wall metabolism. Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family.
  
  
 0.841
acm1
Cell wall hydrolase/muramidase.
     
 0.749
lp_1363
Hypothetical protein.
  
    0.694
lys
Lysozyme.
  
  
 0.684
acm2
Cell wall hydrolase/muramidase.
  
  
 0.590
pkn1
Serine/threonine protein kinase.
 
  
 0.585
ctpA
Carboxy-terminal proteinase, S41 family,peptidoglycan-bound; Belongs to the peptidase S41A family.
  
  
 0.542
metS
methionine-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
  
  
 0.528
lrgA
Murein hydrolase export protein.
 
  
 0.526
lp_2520
Extracellular protein, NlpC/P60 family,gamma-D-glutamate-meso-diaminopimelate muropeptidase.
 
  
0.523
Your Current Organism:
Lactobacillus plantarum
NCBI taxonomy Id: 220668
Other names: L. plantarum WCFS1, Lactobacillus plantarum WCFS1, Lactobacillus plantarum str. WCFS1, Lactobacillus plantarum strain WCFS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.