Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OB0534 | OB0588 | gene:10732738 | gene:10732792 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Protein kinase; CDS_ID OB0588. | 0.809 |
OB0534 | OB1359 | gene:10732738 | gene:10733599 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Nitrogen fixation positive activator (partial); CDS_ID OB1359. | 0.872 |
OB0534 | OB1579 | gene:10732738 | gene:10733819 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Chemotaxis protein (modulation of CheA activity in response to attractants); CDS_ID OB1579. | 0.994 |
OB0534 | OB2542 | gene:10732738 | gene:10734794 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Chemotaxis protein (modulation of CheA activity in response to attractants); CDS_ID OB2542. | 0.994 |
OB0534 | OB2543 | gene:10732738 | gene:10734795 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Two-component sensor histidine kinase; CDS_ID OB2543. | 0.998 |
OB0534 | cheB | gene:10732738 | gene:10733818 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Methyl-accepting chemotaxis proteins (MCP)-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.989 |
OB0534 | cheD | gene:10732738 | gene:10733821 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Methylation of methyl-accepting chemotaxis protein; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family. | 0.984 |
OB0534 | cheR | gene:10732738 | gene:10734026 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Methyl-accepting chemotaxis proteins (MCP)methyltransferase; CDS_ID OB1786. | 0.989 |
OB0534 | cheY | gene:10732738 | gene:10733809 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Two-component response regulator involved in modulation of flagellar; CDS_ID OB1569. | 0.984 |
OB0534 | fliY | gene:10732738 | gene:10733808 | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | Flagellar motor switch protein; CDS_ID OB1568. | 0.859 |
OB0588 | OB0534 | gene:10732792 | gene:10732738 | Protein kinase; CDS_ID OB0588. | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | 0.809 |
OB0588 | OB1359 | gene:10732792 | gene:10733599 | Protein kinase; CDS_ID OB0588. | Nitrogen fixation positive activator (partial); CDS_ID OB1359. | 0.915 |
OB0588 | OB1579 | gene:10732792 | gene:10733819 | Protein kinase; CDS_ID OB0588. | Chemotaxis protein (modulation of CheA activity in response to attractants); CDS_ID OB1579. | 0.529 |
OB0588 | OB2542 | gene:10732792 | gene:10734794 | Protein kinase; CDS_ID OB0588. | Chemotaxis protein (modulation of CheA activity in response to attractants); CDS_ID OB2542. | 0.531 |
OB0588 | OB2543 | gene:10732792 | gene:10734795 | Protein kinase; CDS_ID OB0588. | Two-component sensor histidine kinase; CDS_ID OB2543. | 0.550 |
OB0588 | cheB | gene:10732792 | gene:10733818 | Protein kinase; CDS_ID OB0588. | Methyl-accepting chemotaxis proteins (MCP)-glutamate methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. | 0.475 |
OB0588 | cheR | gene:10732792 | gene:10734026 | Protein kinase; CDS_ID OB0588. | Methyl-accepting chemotaxis proteins (MCP)methyltransferase; CDS_ID OB1786. | 0.842 |
OB0588 | cheY | gene:10732792 | gene:10733809 | Protein kinase; CDS_ID OB0588. | Two-component response regulator involved in modulation of flagellar; CDS_ID OB1569. | 0.547 |
OB0588 | fliY | gene:10732792 | gene:10733808 | Protein kinase; CDS_ID OB0588. | Flagellar motor switch protein; CDS_ID OB1568. | 0.905 |
OB1359 | OB0534 | gene:10733599 | gene:10732738 | Nitrogen fixation positive activator (partial); CDS_ID OB1359. | Methyl-accepting chemotaxis protein; CDS_ID OB0534. | 0.872 |
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