STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD61163.1TonB-linked outer membrane protein, SusC/RagA family. (1097 aa)    
Predicted Functional Partners:
SFD61185.1
SusD family protein.
 
 
   0.954
SFD61139.1
Protein of unknown function.
 
     0.947
SFD61078.1
Histidine kinase.
 
     0.869
SFD42709.1
SusD family protein.
  
 
   0.786
SFD42582.1
SusD family protein.
  
 
   0.782
SFD26665.1
SusD family protein.
  
 
   0.778
SFD61061.1
DNA-binding response regulator, LytR/AlgR family.
     0.746
SFD60403.1
Starch-binding associating with outer membrane.
  
 
   0.603
SFD60449.1
Starch-binding associating with outer membrane.
  
 
   0.599
SFD61198.1
Hypothetical protein.
       0.531
Your Current Organism:
Algibacter lectus
NCBI taxonomy Id: 221126
Other names: A. lectus, Algibacter lectus Nedashkovskaya et al. 2004, Bacteroidetes bacterium KMM 3902, Bacteroidetes bacterium KMM 3914, DSM 15365, JCM 21761, KCTC 12103, KMM 3902
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